MONet_concatenate_modalities script

Concatenate modalities from Multi-Modal dataset.

usage: MONet_concatenate_modalities [-h] --input_folder INPUT_FOLDER
                                    --output_folder OUTPUT_FOLDER
                                    --ref_modality REF_MODALITY
                                    --modality-mapping MODALITY_MAPPING

Named Arguments

--input_folder

Path to the input folder containing the dataset.

--output_folder

Path to the output folder where concatenated data will be saved.

--ref_modality

Reference modality to which all other modalities will be resampled. Example: ‘CT’

--modality-mapping

Comma-separated list of modalities to concatenate. Example: ‘CT:_ct.nii.gz,PT:_pet.nii.gz’